# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "RTNsurvival" in publications use:'
type: software
license: Artistic-2.0
title: 'RTNsurvival: Survival analysis using transcriptional networks inferred by
  the RTN package'
version: 1.29.0
doi: 10.1093/bioinformatics/btz229
identifiers:
- type: doi
  value: 10.32614/CRAN.package.RTNsurvival
abstract: 'RTNsurvival is a tool for integrating regulons generated by the RTN package
  with survival information. For a given regulon, the 2-tailed GSEA approach computes
  a differential Enrichment Score (dES) for each individual sample, and the dES distribution
  of all samples is then used to assess the survival statistics for the cohort. There
  are two main survival analysis workflows: a Cox Proportional Hazards approach used
  to model regulons as predictors of survival time, and a Kaplan-Meier analysis assessing
  the stratification of a cohort based on the regulon activity. All plots can be fine-tuned
  to the user''s specifications.'
authors:
- family-names: Castro
  given-names: Mauro A. A.
  email: clari.groeneveld@gmail.com
- family-names: Groeneveld
  given-names: Clarice S.
- family-names: Chagas
  given-names: Vinicius S.
preferred-citation:
  type: article
  title: 'RTNsurvival: an R/Bioconductor package for regulatory network survival analysis.'
  authors:
  - family-names: Groeneveld
    given-names: Clarice
  - family-names: Chagas
    given-names: Vinicius
  - family-names: Jones
    given-names: Steven
  - family-names: Robertson
    given-names: Gordon
  - family-names: Ponder
    given-names: Bruce
  - family-names: Meyer
    given-names: Kerstin
  - family-names: Castro
    given-names: Mauro
  journal: Bioinformatics
  year: '2019'
  doi: 10.1093/bioinformatics/btz229
  start: btz229
repository: https://bioc.r-universe.dev
commit: 4a2c66cae4e59b240ce662ee343a120ada04c375
contact:
- family-names: Castro
  given-names: Mauro A. A.
  email: clari.groeneveld@gmail.com
references:
- type: article
  title: Regulators of genetic risk of breast cancer identified by integrative network
    analysis.
  authors:
  - family-names: Castro
    given-names: Mauro
  - family-names: Santiago
    given-names: Ines
    name-particle: de
  - family-names: Campbell
    given-names: Thomas
  - family-names: Vaughn
    given-names: Courtney
  - family-names: Hickey
    given-names: Theresa
  - family-names: Ross
    given-names: Edith
  - family-names: Tilley
    given-names: Wayne
  - family-names: Markowetz
    given-names: Florian
  - family-names: Ponder
    given-names: Bruce
  - family-names: Meyer
    given-names: Kerstin
  journal: Nature Genetics
  year: '2016'
  volume: '48'
  doi: 10.1038/ng.3458
  start: '33'