Version: 2.0.0
Text: added a novel pathway analysis method based on the primary
        dis-regulation of the genes in each pathway

Version: 1.2.0
Text: add the ability to analyze gene sets (pathways with no
        interaction) using only over-representation

Version: 1.2.0
Text: bug fixes: plot boundaries, etc.

Version: 1.0.0
Category: Initial release of package ROntoTools includes
Text: pe: Pathway analysis tool Pathway-Express with the following
        features: - perform pathway analysis on pathways defined in the
        standard graph format

Version: 1.0.0
Category: provided by the package graph
Text: perform the analysis using either differentially expressed (DE)
        genes or

Version: 1.0.0
Category: using a cut-of-free analysis
Text: when available, use both information related to the strangth of
        the inter-

Version: 1.0.0
Category: action between the genes (as edgeWeights) and the relevance
        of each gene (as
Text:

Version: 1.0.0
Category: nodeWeights
Text: the results are summerized using the generic function Summary *
        keggPathwayGraphs/keggPathwayNames: Utility to download and
        parse the KEGG

Version: 1.0.0
Category: pathways data in graph objects
Text: based on the work in the packages KEGGREST and KEGGgraph *
        nodeWeigths: the missing generic convenience function from
        package graph to

Version: 1.0.0
Category: get the node weights of a graph
Text: alpha1MR/alphaMLG: two utilites to transform the a vector of
        p-values into

Version: 1.0.0
Category: weights to be used as nodeWeights
Text: