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# CITATION file created with {cffr} R package
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cff-version: 1.2.0
message: 'To cite package "RNAsense" in publications use:'
type: software
license: GPL-3.0-only
title: 'RNAsense: Analysis of Time-Resolved RNA-Seq Data'
version: 1.19.0
abstract: RNA-sense tool compares RNA-seq time curves in two experimental conditions,
  i.e. wild-type and mutant, and works in three steps. At Step 1, it builds expression
  profile for each transcript in one condition (i.e. wild-type) and tests if the transcript
  abundance grows or decays significantly. Dynamic transcripts are then sorted to
  non-overlapping groups (time profiles) by the time point of switch up or down. At
  Step 2, RNA-sense outputs the groups of differentially expressed transcripts, which
  are up- or downregulated in the mutant compared to the wild-type at each time point.
  At Step 3, Correlations (Fisher's exact test) between the outputs of Step 1 (switch
  up- and switch down- time profile groups) and the outputs of Step2 (differentially
  expressed transcript groups) are calculated. The results of the correlation analysis
  are printed as two-dimensional color plot, with time profiles and differential expression
  groups at y- and x-axis, respectively, and facilitates the biological interpretation
  of the data.
authors:
- family-names: Rosenblatt
  given-names: Marcus
  email: marcus.rosenblatt@gmail.com
- family-names: Meijang
  given-names: Gao
- family-names: Hass
  given-names: Helge
- family-names: Onichtchouk
  given-names: Daria
repository: https://bioc.r-universe.dev
repository-code: https://github.com/marcusrosenblatt/RNAsense
url: https://github.com/marcusrosenblatt/RNAsense
contact:
- family-names: Rosenblatt
  given-names: Marcus
  email: marcus.rosenblatt@gmail.com