Package: RNAmodR.AlkAnilineSeq
Type: Package
Title: Detection of m7G, m3C and D modification by AlkAnilineSeq
Version: 1.27.0
Date: 2025-09-23
Authors@R: c(person("Felix G.M.", 
                    "Ernst", 
                    email = "felix.gm.ernst@outlook.com", 
                    role = c("aut", "cre"),
                    comment = c(ORCID = "0000-0001-5064-0928")),
             person("Denis L.J.", 
                    "Lafontaine", 
                    email = "denis.lafontaine@ulb.ac.be", 
                    role = c("ctb", "fnd")))
Description: RNAmodR.AlkAnilineSeq implements the detection of m7G, m3C
        and D modifications on RNA from experimental data generated
        with the AlkAnilineSeq protocol. The package builds on the core
        functionality of the RNAmodR package to detect specific
        patterns of the modifications in high throughput sequencing
        data.
biocViews: Software, WorkflowStep, Visualization, Sequencing
License: Artistic-2.0
Encoding: UTF-8
LazyData: false
Depends: R (>= 4.0), RNAmodR (>= 1.5.3)
Imports: methods, S4Vectors, IRanges, BiocGenerics, GenomicRanges, Gviz
Suggests: BiocStyle, knitr, rmarkdown, testthat, rtracklayer,
        Biostrings, Seqinfo, RNAmodR.Data
Collate: 'RNAmodR.AlkAnilineSeq.R' 'Modifier-AlkAnilineSeq-class.R'
        'Modifier-AlkAnilineSeq-viz.R'
VignetteBuilder: knitr
RoxygenNote: 7.3.3
BugReports: https://github.com/FelixErnst/RNAmodR.AlkAnilineSeq/issues
URL: https://github.com/FelixErnst/RNAmodR.AlkAnilineSeq
Config/pak/sysreqs: cmake make libbz2-dev libicu-dev libjpeg-dev
        liblzma-dev libpng-dev libuv1-dev libxml2-dev libssl-dev
        xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:50:24 UTC
RemoteUrl: https://github.com/bioc/RNAmodR.AlkAnilineSeq
RemoteRef: HEAD
RemoteSha: efb96fd3f1ffe21f1211ebcdc48bb3c769adea82
NeedsCompilation: no
Packaged: 2026-06-18 11:23:47 UTC; root
Author: Felix G.M. Ernst [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-5064-0928>),
  Denis L.J. Lafontaine [ctb, fnd]
Maintainer: Felix G.M. Ernst <felix.gm.ernst@outlook.com>