Package: RJMCMCNucleosomes
Version: 1.37.0
Date: 2025-07-28
Title: Bayesian hierarchical model for genome-wide nucleosome
        positioning with high-throughput short-read data (MNase-Seq)
Description: This package does nucleosome positioning using informative
        Multinomial-Dirichlet prior in a t-mixture with reversible jump
        estimation of nucleosome positions for genome-wide profiling.
Authors@R: c(person("Pascal", "Belleau",
    email="pascal_belleau@hotmail.com", role=c("aut")),
    person("Rawane", "Samb",
    email="rawane.samb.1@ulaval.ca", role=c("aut")),
    person("Astrid", "Deschênes",
    email="adeschen@hotmail.com",
    role=c("cre","aut")),
    person("Khader", "Khadraoui",
    email="Khader.Khadraoui@mat.ulaval.ca", role=c("aut")),
    person("Lajmi", "Lakhal-Chaieb",
    email="Lajmi.Lakhal@mat.ulaval.ca;", role=c("aut")),
    person("Arnaud", "Droit",
    email="arnaud.droit@crchuq.ulaval.ca", role=c("aut")))
Depends: R (>= 3.5), IRanges, GenomicRanges
Imports: Rcpp (>= 0.12.5), consensusSeekeR, BiocGenerics, Seqinfo,
        S4Vectors (>= 0.23.10), BiocParallel, stats, graphics, methods,
        grDevices
Suggests: BiocStyle, knitr, rmarkdown, nucleoSim, RUnit
LinkingTo: Rcpp
SystemRequirements: Rcpp
Encoding: UTF-8
License: Artistic-2.0
URL: https://github.com/ArnaudDroitLab/RJMCMCNucleosomes
BugReports: https://github.com/ArnaudDroitLab/RJMCMCNucleosomes/issues
VignetteBuilder: knitr
biocViews: BiologicalQuestion, ChIPSeq, NucleosomePositioning,
        Software, StatisticalMethod, Bayesian, Sequencing, Coverage
RoxygenNote: 6.0.1
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libxml2-dev
        libssl-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:44:53 UTC
RemoteUrl: https://github.com/bioc/RJMCMCNucleosomes
RemoteRef: HEAD
RemoteSha: 510ac6e62b2118b5d60fe7730dbbc46590ddccfe
NeedsCompilation: yes
Packaged: 2026-06-16 07:38:43 UTC; root
Author: Pascal Belleau [aut],
  Rawane Samb [aut],
  Astrid Deschênes [cre, aut],
  Khader Khadraoui [aut],
  Lajmi Lakhal-Chaieb [aut],
  Arnaud Droit [aut]
Maintainer: Astrid Deschênes <adeschen@hotmail.com>