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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "RFGeneRank" in publications use:'
type: software
license: MIT
title: 'RFGeneRank: RFGeneRank: Cross-validated Stable Predictive Gene Ranking for
  Transcriptomics'
version: 1.1.0
doi: 10.32614/CRAN.package.RFGeneRank
abstract: Tools to harmonize bulk RNA-seq matrices, optionally apply batch correction,
  and train cross-validated classification models using ranger, glmnet, or xgboost.
  Supports leakage-safe feature selection, permutation importance, SHAP-based interpretability,
  and calibration methods (Platt or isotonic). Provides stability metrics across folds,
  embeddings (PCA/UMAP), ROC visualization, SHAP dependence plots, and tidy ranked-gene
  tables for downstream analysis.
authors:
- family-names: Albeshri
  given-names: Abdulaziz
  email: a.z.a1410@hotmail.com
  orcid: https://orcid.org/0000-0002-0718-2439
repository: https://bioc.r-universe.dev
repository-code: https://github.com/Abdulaziz-Albeshri/RFGeneRank
commit: 6ba66af81a926961ca5fe509ae40b7865bbd5ee6
url: https://github.com/Abdulaziz-Albeshri/RFGeneRank
date-released: '2026-04-28'
contact:
- family-names: Albeshri
  given-names: Abdulaziz
  email: a.z.a1410@hotmail.com
  orcid: https://orcid.org/0000-0002-0718-2439