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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "REMP" in publications use:'
type: software
license: GPL-3.0-only
title: 'REMP: Repetitive Element Methylation Prediction'
version: 1.29.0
abstract: Machine learning-based tools to predict DNA methylation of locus-specific
  repetitive elements (RE) by learning surrounding genetic and epigenetic information.
  These tools provide genomewide and single-base resolution of DNA methylation prediction
  on RE that are difficult to measure using array-based or sequencing-based platforms,
  which enables epigenome-wide association study (EWAS) and differentially methylated
  region (DMR) analysis on RE.
authors:
- family-names: Zheng
  given-names: Yinan
  email: y-zheng@northwestern.edu
- family-names: Liu
  given-names: Lei
  email: lei.liu@northwestern.edu
- family-names: Zhang
  given-names: Wei
  email: wei.zhang1@northwestern.edu
- family-names: Kibbe
  given-names: Warren
  email: warren.kibbe@nih.gov
- family-names: Hou
  given-names: Lifang
  email: l-hou@northwestern.edu
preferred-citation:
  type: article
  title: Prediction of genome-wide DNA methylation in repetitive elements
  authors:
  - family-names: Zheng
    given-names: Yinan
    email: y-zheng@northwestern.edu
  - family-names: Joyce
    given-names: Brian
  - family-names: Liu
    given-names: Lei
    email: lei.liu@northwestern.edu
  - family-names: Zhang
    given-names: Zhou
  - family-names: Kibbe
    given-names: Warren
    email: warren.kibbe@nih.gov
  - family-names: Zhang
    given-names: Wei
    email: wei.zhang1@northwestern.edu
  - family-names: Hou
    given-names: Lifang
    email: l-hou@northwestern.edu
  year: '2017'
  journal: Nucleic Acids Research
repository: https://bioc.r-universe.dev
repository-code: https://github.com/YinanZheng/REMP
url: https://github.com/YinanZheng/REMP
contact:
- family-names: Zheng
  given-names: Yinan
  email: y-zheng@northwestern.edu