Package: REDseq
Type: Package
Title: Analysis of high-throughput sequencing data processed by
        restriction enzyme digestion
Version: 1.59.0
Date: 2021-05-02
Author: Lihua Julie Zhu, Junhui Li and Thomas Fazzio
Maintainer: Lihua Julie Zhu <julie.zhu@umassmed.edu>
Depends: R (>= 3.5.0), BiocGenerics, BSgenome.Celegans.UCSC.ce2,
        multtest, Biostrings, BSgenome, ChIPpeakAnno
Imports: AnnotationDbi, graphics, IRanges (>= 1.13.5), stats, utils
biocViews: Sequencing, SequenceMatching, Preprocessing
Description: The package includes functions to build restriction enzyme
        cut site (RECS) map, distribute mapped sequences on the map
        with five different approaches, find enriched/depleted RECSs
        for a sample, and identify differentially enriched/depleted
        RECSs between samples.
License: GPL (>=2)
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:35:28 UTC
RemoteUrl: https://github.com/bioc/REDseq
RemoteRef: HEAD
RemoteSha: c566c72a8012c0487d553e691dae65aec1721e6a
NeedsCompilation: no
Packaged: 2026-06-22 10:58:18 UTC; root