NEWS

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RCyjs 1.9.8

BUG FIXES

• Significant (3x) speedup. A 5000-node, 6000-edge graph transmits to Cytoscape from R in about 20 seconds.

RCyjs 1.8.0

NEW FEATURES

• setNodeOpacityRule, controlling node fill color, border and/or label; interpolate & lookup modes both supported
• getNodeSize
• saveImage now supports pdf as well as png and svg formats
• setDefaultEdgeFontSize
• getAdjacentEdgeNames

SIGNIFICANT USER-VISIBLE CHANGES

• changed method names: layout -> layoutNetwork, version -> pluginVersion, get/setPosition -> get/setNodePosition
• NAMESPACE now imports four more methods from the graph package, helpful for package developers using RCytoscape: edgemode, addNode, addEdge, requested by Robert Flight.

BUG FIXES

• Changed getNodePosition node.name.delimiter to eliminate regex token, from ':.:' to ':-:' saveLayout now has optional 3rd parameter, 'timestamp.in.filename'
• Fixed bug in setNodeLabelDirect. Multiple nodes, one label now works.
• setCenter now casts x,y to numeric before sending out to CyRPC