Package: RCM
Type: Package
Title: Fit row-column association models with the negative binomial
        distribution for the microbiome
Version: 1.29.0
Authors@R: 
    c(person(given = "Stijn", family = "Hawinkel", 
    email = "stijn.hawinkel@psb.ugent.be", 
    role=c("cre", "aut"), comment = c(ORCID = "0000-0002-4501-5180")))
Description: Combine ideas of log-linear analysis of contingency table,
        flexible response function estimation and empirical Bayes
        dispersion estimation for explorative visualization of
        microbiome datasets. The package includes unconstrained as well
        as constrained analysis. In addition, diagnostic plot to detect
        lack of fit are available.
License: GPL-2
Encoding: UTF-8
Imports: RColorBrewer, alabama, edgeR, reshape2, tseries, stats, VGAM,
        ggplot2 (>= 2.2.1.9000), nleqslv, phyloseq, tensor, MASS,
        grDevices, graphics, methods
Depends: R (>= 4.5.0)
Suggests: knitr, rmarkdown, testthat
VignetteBuilder: knitr
biocViews: Metagenomics, DimensionReduction, Microbiome, Visualization
BugReports: https://github.com/CenterForStatistics-UGent/RCM/issues
URL:
        https://bioconductor.org/packages/release/bioc/vignettes/RCM/inst/doc/RCMvignette.html/
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: libglpk-dev libicu-dev libxml2-dev libssl-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-07-17 12:04:10 UTC
RemoteUrl: https://github.com/bioc/RCM
RemoteRef: HEAD
RemoteSha: f58df1ebe0e37fcf016f8c2996037b5de2ca026a
NeedsCompilation: no
Packaged: 2026-07-17 15:10:09 UTC; root
Author: Stijn Hawinkel [cre, aut] (ORCID:
    <https://orcid.org/0000-0002-4501-5180>)
Maintainer: Stijn Hawinkel <stijn.hawinkel@psb.ugent.be>