Package: R453Plus1Toolbox
Type: Package
Title: A package for importing and analyzing data from Roche's Genome
        Sequencer System
Version: 1.63.2
Date: 2026-07-01
Author: Hans-Ulrich Klein, Christoph Bartenhagen, Christian Ruckert
Maintainer: Hans-Ulrich Klein <h.klein@uni-muenster.de>
Depends: R (>= 2.12.0), methods, VariantAnnotation (>= 1.25.11),
        Biostrings (>= 2.47.6), pwalign, Biobase
Imports: utils, grDevices, graphics, stats, tools, xtable, R2HTML,
        TeachingDemos, BiocGenerics, S4Vectors (>= 0.17.25), IRanges
        (>= 2.13.12), XVector, GenomicRanges (>= 1.31.8),
        SummarizedExperiment, biomaRt, BSgenome (>= 1.47.3), Rsamtools,
        ShortRead (>= 1.37.1)
Suggests: rtracklayer, BSgenome.Hsapiens.UCSC.hg19,
        BSgenome.Scerevisiae.UCSC.sacCer2
Description: The R453Plus1 Toolbox comprises useful functions for the
        analysis of data generated by Roche's 454 sequencing platform.
        It adds functions for quality assurance as well as for
        annotation and visualization of detected variants,
        complementing the software tools shipped by Roche with their
        product. Further, a pipeline for the detection of structural
        variants is provided.
License: LGPL-3
biocViews: Sequencing, Infrastructure, DataImport, DataRepresentation,
        Visualization, QualityControl, ReportWriting
Config/pak/sysreqs: make libbz2-dev libicu-dev libjpeg-dev liblzma-dev
        libpng-dev libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-07-01 19:22:45 UTC
RemoteUrl: https://github.com/bioc/R453Plus1Toolbox
RemoteRef: HEAD
RemoteSha: c022d307efd1aaf48be38fec2fa70d28db3f95c2
NeedsCompilation: yes
Packaged: 2026-07-05 13:57:50 UTC; root