NEWS

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QTLExperiment 2.3.1 (2026-01-06)

• Updated documentation for sumstats2qtle() to remove warning.

QTLExperiment 2.1.3 (2025-10-27)

• Changed the data loading function sumstats2qtle().
  • Added a flag to skip checking for multiple association tests for combinations of state, feature and variant.
  • Replaced a left_join with a match which should be faster.

QTLExperiment 2.1.2 (2025-09-30)

• Added support for QTLExperiment objects with only one state, i.e. one column.
  • sumstats2qtle() can read in data when input has only one path.
  • mockQTLE() allows nStates = 1.

QTLExperiment 2.1.1 (2025-07-14)

• subset function is now a generic.

QTLExperiment 1.99.3 (2025-05-26)

• Fixed sumstats2qtle function so that the betas, errors and pvalues are matrices and not data.frames.

QTLExperiment 1.99.2 (2025-04-11)

• Updated the function sumstats2qtle to print a warning when there are duplicate row names.

QTLExperiment 1.99.1 (2025-03-05)

• Major update to the underlying representation of the slots.
  • Slots now use elementMetadata and colData.
  • No longer use internal col and row Data.
  • Almost all functions have been updated and testing is working but there may still be some edge cases that I have missed.
  • Better consistency with other child classes of SingleCellExperiment.

QTLExperiment 1.5.0 (2024-10-30)

• Added a test for object validity error messages

QTLExperiment 1.3.0 (2024-05-01)

• Minor changes to tests
• Typo and indentation in vignette

QTLExperiment 0.99.6 (2023-10-19)

• Added return statements for all documentation files. This removes the warning from BiocCheck()

QTLExperiment 0.99.5 (2023-10-19)

• Added a few tests for internal functions

QTLExperiment 0.99.4 (2023-10-18)

• Updated description and readme
• Improved indentation consistency
• Split the miscellaneous documentation file into two

QTLExperiment 0.99.3 (2023-10-10)

• Removed all external downloads by bundling data into package

QTLExperiment 0.99.2 (2023-10-03)

• Added testing during R CMD check
• Added more examples and updated documentation
• Added support for additional colData in sumstats2QTL()

QTLExperiment 0.99.1 (2023-09-28)

• Small tweaks e.g. using seq_along()

QTLExperiment 0.99.0 (2023-09-28)

• Submitted to Bioconductor