# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "PureCN" in publications use:'
type: software
license: Artistic-2.0
title: 'PureCN: Copy number calling and SNV classification using targeted short read
  sequencing'
version: 2.11.0
doi: 10.1186/s13029-016-0060-z
abstract: This package estimates tumor purity, copy number, and loss of heterozygosity
  (LOH), and classifies single nucleotide variants (SNVs) by somatic status and clonality.
  PureCN is designed for targeted short read sequencing data, integrates well with
  standard somatic variant detection and copy number pipelines, and has support for
  tumor samples without matching normal samples.
authors:
- family-names: Riester
  given-names: Markus
  email: markus.riester@novartis.com
  orcid: https://orcid.org/0000-0002-4759-8332
- family-names: Singh
  given-names: Angad P.
preferred-citation:
  type: article
  title: 'PureCN: Copy number calling and SNV classification using targeted short
    read sequencing'
  authors:
  - family-names: Riester
    given-names: Markus
    email: markus.riester@novartis.com
    orcid: https://orcid.org/0000-0002-4759-8332
  - family-names: Singh
    given-names: Angad
  - family-names: Brannon
    given-names: A. Rose
  - family-names: Yu
    given-names: Kun
  - family-names: Campbell
    given-names: Catarina D.
  - family-names: Chiang
    given-names: Derek Y.
  - family-names: Morrissey
    given-names: Michael
  year: '2016'
  volume: '11'
  doi: 10.1186/s13029-016-0060-z
  journal: Source Code for Biology and Medicine
  start: '13'
repository: https://bioc.r-universe.dev
repository-code: https://github.com/lima1/PureCN
url: https://github.com/lima1/PureCN
date-released: '2024-04-24'
contact:
- family-names: Riester
  given-names: Markus
  email: markus.riester@novartis.com
  orcid: https://orcid.org/0000-0002-4759-8332