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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "Pirat" in publications use:'
type: software
license: GPL-2.0-only
title: 'Pirat: Precursor or Peptide Imputation under Random Truncation'
version: 0.99.26
abstract: Pirat enables the imputation of missing values (either MNARs or MCARs) in
  bottom-up LC-MS/MS proteomics data using a penalized maximum likelihood strategy.
  It does not require any parameter tuning, it models the instrument censorship from
  the data available. It accounts for sibling peptides correlations and it can leverage
  complementary transcriptomics measurements.
authors:
- family-names: Etourneau
  given-names: Lucas
  email: lucas.etourneau@univ-grenoble-alpes.fr
- family-names: Fancello
  given-names: Laura
  email: laura.fancello@cea.fr
- family-names: Wieczorek
  given-names: Samuel
  email: samuel.wieczorek@cea.fr
  orcid: https://orcid.org/0000-0002-5016-1203
- family-names: Varoquaux
  given-names: Nelle
  email: nelle.varoquaux@univ-grenoble-alpes.fr
- family-names: Burger
  given-names: Thomas
  email: thomas.burger@cea.fr
repository: https://bioc.r-universe.dev
repository-code: https://github.com/prostarproteomics/Pirat
url: http://www.prostar-proteomics.org/
contact:
- family-names: Wieczorek
  given-names: Samuel
  email: samuel.wieczorek@cea.fr
  orcid: https://orcid.org/0000-0002-5016-1203