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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "PhyloProfile" in publications use:'
type: software
license: MIT
title: 'PhyloProfile: PhyloProfile'
version: 1.19.6
abstract: PhyloProfile is a tool for exploring complex phylogenetic profiles. Phylogenetic
  profiles, presence/absence patterns of genes over a set of species, are commonly
  used to trace the functional and evolutionary history of genes across species and
  time. With PhyloProfile we can enrich regular phylogenetic profiles with further
  data like sequence/structure similarity, to make phylogenetic profiling more meaningful.
  Besides the interactive visualisation powered by R-Shiny, the package offers a set
  of further analysis features to gain insights like the gene age estimation or core
  gene identification.
authors:
- family-names: Tran
  given-names: Vinh
  email: tran@bio.uni-frankfurt.de
  orcid: https://orcid.org/0000-0001-6772-7595
- family-names: Greshake Tzovaras
  given-names: Bastian
  email: bgreshake@googlemail.com
- family-names: Ebersberger
  given-names: Ingo
  email: ebersberger@bio.uni-frankfurt.de
preferred-citation:
  type: article
  title: 'PhyloProfile: Dynamic visualization and exploration of multi-layered phylogenetic
    profiles'
  authors:
  - family-names: Tran
    given-names: Ngoc Vinh
  - family-names: Tzovaras
    given-names: Bastian Greshake
  - family-names: Ebersberger
    given-names: Ingo
    email: ebersberger@bio.uni-frankfurt.de
  journal: Bioinformatics
  volume: 34(17)
  year: '2018'
  url: https://doi.org/10.1093/bioinformatics/bty225
  start: 3041–3043
repository: https://bioc.r-universe.dev
repository-code: https://github.com/BIONF/PhyloProfile
url: https://github.com/BIONF/PhyloProfile/
date-released: '2024-07-23'
contact:
- family-names: Tran
  given-names: Vinh
  email: tran@bio.uni-frankfurt.de
  orcid: https://orcid.org/0000-0001-6772-7595