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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "PhosR" in publications use:'
type: software
license: GPL-3.0-only
title: 'PhosR: A set of methods and tools for comprehensive analysis of phosphoproteomics
  data'
version: 1.15.0
identifiers:
- type: doi
  value: 10.32614/CRAN.package.PhosR
abstract: 'PhosR is a package for the comprenhensive analysis of phosphoproteomic
  data. There are two major components to PhosR: processing and downstream analysis.
  PhosR consists of various processing tools for phosphoproteomics data including
  filtering, imputation, normalisation, and functional analysis for inferring active
  kinases and signalling pathways.'
authors:
- family-names: Yang
  given-names: Pengyi
  email: pengyi.yang@sydney.edu.au
- family-names: Kim
  given-names: Taiyun
  email: taiyun.kim91@gmail.com
- family-names: Kim
  given-names: Hani Jieun
  email: jieun.kim@sydney.edu.au
preferred-citation:
  type: article
  title: PhosR enables processing and functional analysis of phosphoproteomic data
  authors:
  - family-names: Kim
    given-names: Hani Jieun
    email: jieun.kim@sydney.edu.au
  - family-names: Kim
    given-names: Taiyun
    email: taiyun.kim91@gmail.com
  - family-names: Hoffman
    given-names: Nolan J
  - family-names: Xiao
    given-names: Di
  - family-names: James
    given-names: David E
  - family-names: Humphrey
    given-names: Sean J
  - family-names: Yang
    given-names: Pengyi
    email: pengyi.yang@sydney.edu.au
  journal: Cell Reports
  year: '2021'
  volume: '34'
  issue: '8'
  url: https://doi.org/10.1016/j.celrep.2021.108771
repository: https://bioc.r-universe.dev
commit: 9a43a09f58b45bc0529e925a18f15fcbb3050b55
contact:
- family-names: Kim
  given-names: Taiyun
  email: taiyun.kim91@gmail.com
references:
- type: article
  title: Protocol for the processing and downstream analysis of phosphoproteomic data
    with PhosR
  authors:
  - family-names: Kim
    given-names: Hani Jieun
  - family-names: Kim
    given-names: Taiyun
  - family-names: Xiao
    given-names: Di
  - family-names: Yang
    given-names: Pengyi
  journal: STAR Protocols
  year: '2021'
  volume: '2'
  issue: '2'
  url: https://doi.org/10.1016/j.xpro.2021.100585