Package: PanomiR Title: Detection of miRNAs that regulate interacting groups of pathways Version: 1.17.0 Authors@R: c( person("Pourya", "Naderi", email = "pouryany@gmail.com", role = c("aut", "cre")), person("Yue Yang (Alan)", "Teo", email = "yueyang.teo@epfl.ch", role = c("aut")), person("Ilya", "Sytchev", email = "isytchev@hsph.harvard.edu", role = c("aut")), person("Winston", "Hide", email = "whide@bidmc.harvard.edu", role = c("aut"))) Description: PanomiR is a package to detect miRNAs that target groups of pathways from gene expression data. This package provides functionality for generating pathway activity profiles, determining differentially activated pathways between user-specified conditions, determining clusters of pathways via the PCxN package, and generating miRNAs targeting clusters of pathways. These function can be used separately or sequentially to analyze RNA-Seq data. License: MIT + file LICENSE Encoding: UTF-8 RoxygenNote: 7.1.2 Suggests: testthat (>= 3.0.0), BiocStyle, knitr, rmarkdown Config/testthat/edition: 3 biocViews: GeneExpression, GeneSetEnrichment, GeneTarget, miRNA, Pathways Imports: clusterProfiler, dplyr, forcats, GSEABase, igraph, limma, metap, org.Hs.eg.db, parallel, preprocessCore, RColorBrewer, rlang, tibble, withr, utils Depends: R (>= 4.2.0) URL: https://github.com/pouryany/PanomiR BugReports: https://github.com/pouryany/PanomiR/issues VignetteBuilder: knitr Config/pak/sysreqs: libcairo2-dev cmake libfftw3-dev libfontconfig1-dev libfreetype6-dev libglpk-dev make libicu-dev libpng-dev libuv1-dev libxml2-dev libssl-dev zlib1g-dev Repository: https://bioc.r-universe.dev Date/Publication: 2026-04-28 12:57:46 UTC RemoteUrl: https://github.com/bioc/PanomiR RemoteRef: HEAD RemoteSha: d0a6310a04046e164845a0e7fdec6f72dfc3f2d1 NeedsCompilation: no Packaged: 2026-07-04 23:26:07 UTC; root Author: Pourya Naderi [aut, cre], Yue Yang (Alan) Teo [aut], Ilya Sytchev [aut], Winston Hide [aut] Maintainer: Pourya Naderi