# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "PMScanR" in publications use:'
type: software
license: GPL-3.0-only
title: 'PMScanR: Protein motifs analysis and visualisation'
version: 1.3.0
doi: 10.32614/CRAN.package.PMScanR
abstract: Provides tools for large-scale protein motif analysis and visualization
  in R. PMScanR facilitates the identification of motifs using external tools like
  PROSITE's ps_scan (handling necessary file downloads and execution) and enables
  downstream analysis of results. Key features include parsing scan outputs, converting
  formats (e.g., to GFF-like structures), generating motif occurrence matrices, and
  creating informative visualizations such as heatmaps, sequence logos (via seqLogo/ggseqlogo).
  The package also offers an optional Shiny-based graphical user interface for interactive
  analysis, aiming to streamline the process of exploring motif patterns across multiple
  protein sequences.
authors:
- family-names: Jastrzebski
  given-names: Jan Pawel
  email: bioinformatyka@gmail.com
  orcid: https://orcid.org/0000-0001-8699-7742
- family-names: Czopek
  given-names: Damian
  email: dcwmpl@gmail.com
  orcid: https://orcid.org/0009-0005-3471-4866
repository: https://bioc.r-universe.dev
repository-code: https://github.com/prodakt/PMScanR
commit: c144ba8543630ae68ca7ed7b3a1dd116d7082559
url: https://github.com/prodakt/PMScanR
date-released: '2026-04-28'
contact:
- family-names: Jastrzebski
  given-names: Jan Pawel
  email: bioinformatyka@gmail.com
  orcid: https://orcid.org/0000-0001-8699-7742