NEWS

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PLSDAbatch 1.99.1

• Date: 2026-01-06
• Text: Fix the figure display issue
• Details: Fix the issue where Figures 2 and 3 are not shown in the vignette.

PLSDAbatch 1.99.0

• Date: 2025-12-26
• Text: improve usability
• Details:
  • Added a mode argument to PLSDA_batch().
  • Added a criterion argument to linear_regres() to select P-values from the optimal model based on the specified criterion.
  • Added a return.model arugument to linear_regres() to reduce memory usage when set to FALSE.
  • Extended Scatter_Density() to support any multivariate method that returns component scores, including PCA and PLS, with corresponding arguments updated.
  • Added lighten() and darken() functions for enhanced color generation.
  • Refined multiple functions to improve usability.
  • Updated the vignette accordingly.

PLSDAbatch 1.1.1

• Date: 2024-09-18
• Text: pca function clash
• Details: Avoid the clash of function pca() from vegan and mixOmics packages

PLSDAbatch 0.99.3

• Date: 2023-12-21
• Text: Debug percentileofscore
• Details: Debug the function percentileofscore(), thus the generated data frame has rownames and colnames as the input data frame to ensure the operation of function percentile_norm()

PLSDAbatch 0.99.2

• Date: 2023-11-14
• Text: Updates for Bioconductor
• Details: Update several documents
  • DESCRIPTION: Add a URL field pointing to the GitHub repository
  • vignettes: Wrap as many texts as possible to a character limit of 80; Use library() calls instead of sapply(); Use TreeSummarizedExperiment package to reshape datasets; Remove colorize()
  • R: Update for() loops; Remove extra ### lines

PLSDAbatch 0.99.1

• Date: 2023-05-26
• Text: Update Imports
• Details: Move pheatmap, vegan, Biobase, BiocStyle from Suggests to Imports to ensure the generation of vignette

PLSDAbatch 0.99.0

• Date: 2023-04-03
• Details: This version is equal to the version 0.2.3 on GitHub (https://github.com/EvaYiwenWang/PLSDAbatch-source-code)