Package: PAST
Type: Package
Title: Pathway Association Study Tool (PAST)
Version: 1.29.0
Authors@R: c(person("Thrash", "Adam", email = "thrash@igbb.msstate.edu",
    role = c("cre", "aut")), person("DeOrnellis", "Mason", role = c("aut")))
Description: PAST takes GWAS output and assigns SNPs to genes, uses
        those genes to find pathways associated with the genes, and
        plots pathways based on significance. Implements methods for
        reading GWAS input data, finding genes associated with SNPs,
        calculating enrichment score and significance of pathways, and
        plotting pathways.
License: GPL (>=3) + file LICENSE
Encoding: UTF-8
Depends: R (>= 4.0)
Imports: stats, utils, dplyr, rlang, iterators, parallel, foreach,
        doParallel, qvalue, rtracklayer, ggplot2, GenomicRanges,
        S4Vectors
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
RoxygenNote: 7.1.0
URL: https://github.com/IGBB/past
BugReports: https://github.com/IGBB/past/issues
biocViews: Pathways, GeneSetEnrichment
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libxml2-dev
        libssl-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:50:17 UTC
RemoteUrl: https://github.com/bioc/PAST
RemoteRef: HEAD
RemoteSha: b3a609543dc3cc58661b0b707e8a861b37a945b7
NeedsCompilation: no
Packaged: 2026-07-03 23:00:55 UTC; root
Author: Thrash Adam [cre, aut],
  DeOrnellis Mason [aut]
Maintainer: Thrash Adam <thrash@igbb.msstate.edu>