Package: PADOG
Version: 1.55.1
Date: 2026-10-19
Title: Pathway Analysis with Down-weighting of Overlapping Genes
        (PADOG)
Author: Adi Laurentiu Tarca <atarca@med.wayne.edu>; Zhonghui Xu
        <zhonghui.xu@gmail.com>; Gaurav Bhatti <gbhatti@med.wayne.edu>
Depends: R (>= 3.0.0), methods,Biobase
Suggests: doParallel, KEGGdzPathwaysGEO, KEGGandMetacoreDzPathwaysGEO
Maintainer: Adi L. Tarca <atarca@med.wayne.edu>
Description: This package implements a general purpose gene set
        analysis method called PADOG that downplays the importance of
        genes that appear often accross the sets of genes to be
        analyzed. The package provides also a benchmark for gene set
        analysis methods in terms of sensitivity and ranking using 42
        datasets originally curated in KEGGdzPathwaysGEO and
        KEGGandMetacoreDzPathwaysGEO data packages.
License: GPL (>= 2)
URL:
Collate: padog.R compPADOG.R filteranot.R loadCompPADOGBenchmark.R
Imports: limma, AnnotationDbi, GSA, foreach, doRNG, hgu133plus2.db,
        hgu133a.db, KEGGREST, nlme
LazyLoad: yes
biocViews: Microarray, OneChannel, TwoChannel
Config/pak/sysreqs: libpng-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-10-19 17:56:09 UTC
RemoteUrl: https://github.com/bioc/PADOG
RemoteRef: HEAD
RemoteSha: dbc3d6fd21e7aed9930b2907bf7d8ef8598cadae
NeedsCompilation: no
Packaged: 2026-10-19 23:55:32 UTC; root