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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "PAA" in publications use:'
type: software
license: BSD-3-Clause
title: 'PAA: PAA (Protein Array Analyzer)'
version: 1.39.0
doi: 10.1093/bioinformatics/btw037
abstract: PAA imports single color (protein) microarray data that has been saved in
  gpr file format - esp. ProtoArray data. After preprocessing (background correction,
  batch filtering, normalization) univariate feature preselection is performed (e.g.,
  using the "minimum M statistic" approach - hereinafter referred to as "mMs"). Subsequently,
  a multivariate feature selection is conducted to discover biomarker candidates.
  Therefore, either a frequency-based backwards elimination aproach or ensemble feature
  selection can be used. PAA provides a complete toolbox of analysis tools including
  several different plots for results examination and evaluation.
authors:
- family-names: Turewicz
  given-names: Michael
  email: michael.turewicz@rub.de
- family-names: Eisenacher
  given-names: Martin
  email: martin.eisenacher@rub.de
preferred-citation:
  type: article
  title: 'PAA: An R/Bioconductor package for biomarker discovery with protein microarrays'
  authors:
  - family-names: Turewicz
    given-names: Michael
    email: michael.turewicz@rub.de
  - family-names: Ahrens
    given-names: Maike
  - family-names: May
    given-names: Caroline
  - family-names: Marcus
    given-names: Katrin
  - family-names: Eisenacher
    given-names: Martin
    email: martin.eisenacher@rub.de
  year: '2016'
  journal: Bioinformatics
  volume: '32'
  issue: '10'
  doi: 10.1093/bioinformatics/btw037
  url: http://bioinformatics.oxfordjournals.org/content/early/2016/02/17/bioinformatics.btw037
  start: 1577-1579
repository: https://bioc.r-universe.dev
url: http://www.ruhr-uni-bochum.de/mpc/software/PAA/
contact:
- family-names: Turewicz
  given-names: Michael
  email: michael.turewicz@rub.de
- family-names: Eisenacher
  given-names: Martin
  email: martin.eisenacher@rub.de