Package: Oscope
Type: Package
Title: Oscope - A statistical pipeline for identifying oscillatory
        genes in unsynchronized single cell RNA-seq
Version: 1.43.0
Date: 2015-7-28
Author: Ning Leng
Maintainer: Ning Leng <lengning1@gmail.com>
Depends: EBSeq, cluster, testthat, BiocParallel
Suggests: BiocStyle
Description: Oscope is a statistical pipeline developed to identifying
        and recovering the base cycle profiles of oscillating genes in
        an unsynchronized single cell RNA-seq experiment. The Oscope
        pipeline includes three modules: a sine model module to search
        for candidate oscillator pairs; a K-medoids clustering module
        to cluster candidate oscillators into groups; and an extended
        nearest insertion module to recover the base cycle order for
        each oscillator group.
License: Artistic-2.0
Collate: 'AbsCor.R' 'NormForSine.R' 'SineFun.R' 'FormatSineOut.R'
        'Opt2Shift.R' 'SineOptim.R' 'PipeR.R' 'ImpShift.R'
        'PipeShiftCDF.R' 'scanK.R' 'NISFun.R' 'CalcMV.R' 'OscopeKM.R'
        'OscopeENI.R' 'OscopeSine.R' 'FlagCluster.R' 'PermuCut.R'
BuildVignettes: yes
biocViews: ImmunoOncology, StatisticalMethod,RNASeq, Sequencing,
        GeneExpression
NeedsCompilation: no
Config/pak/sysreqs: cmake make libuv1-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:41:38 UTC
RemoteUrl: https://github.com/bioc/Oscope
RemoteRef: HEAD
RemoteSha: 4944b6cdfcd685b25149ded5982b26fdebb175b3
Packaged: 2026-07-13 05:31:09 UTC; root