(v. 1.31.1) avoid non-generic arguments in tbl.src_organism, closing https://github.com/Bioconductor/Organism.dplyr/issues/19
(v. 1.30.1) avoid non-generic arguments in tbl.src_organism, closing https://github.com/Bioconductor/Organism.dplyr/issues/19
src_ucsc()
failed to correctly handle new 'hs1'
resources (T2T genomes) for 'human'
src_organism()
supports an option
overwrite=FALSE
to optionally over-write exisiting (cached)
resources created from a previous txdb version.
src_organism()
supports construction from a TxDb object.
This package provides an interface to combined
Bioconductor org.*
(identifier) and TxDb.*
(genomic coordinate) annotation resources. The interface is
implemented at several levels, including low-level ‘dplyr’,
org-like select()
, and TxDb-like genes()
, etc.
Filters use strict CamelCase convention.
*IdFilter
and *RankFilter
are numeric
(integer), rather than character.