NEWS

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OmaDB 2.19.1 (2024-04-18)

• fix problem with getGenomePairs function after OMA API change

OmaDB 2.7.1 (2020-11-11)

• fix problem after OMA API version change

OmaDB 1.99.3 (2019-04-15)

• update format of NEWS file

OmaDB 1.99.2 (2019-03-13)

• re-license under GPLv3
• updated ipython notebook with examples from manuscript to new release of OMA browser
• improve package according to bioconductor guidelines: o improve README and DESCRIPTION o various cleanups of code and data

OmaDB 1.99.1 (2018-12-28)

• fixes bioconductor CI warnings on missing links in deprecated functions

OmaDB 1.99.0 (2018-12-21)

• major refactoring of codebase: o getData split into getProtein, getGenome, getOMAGroup o renamed getAnnotation -> annotateSequence o renamed getXref -> searchSequence
• getProtein allows to retrieve many protein ids at once
• improved documenation by a lot.

OmaDB 1.1.4 (2018-10-11)

• format option (geneID2GO or GO2geneID) included in getInfo()
• automatic loading and updating of object attributes which are given as URLs upon accession

OmaDB 1.1.3 (2018-09-03)

• Merging of the functions dealing with the members df into one master function getInfo()
• Increased support for paginated responses
• Increased support for larger responses
• Extension of the getData() function (extra param 'detail')
• Extension of the getGenomeAlignment() function (extra param 'rel_type')

OmaDB 1.1.2 (2018-09-03)

• addition of the bulkRetrieve() function that handles POST requests

OmaDB 1.0.1 (2018-06-29)

• Improved robustness of API calls

OmaDB 1.0.0 (2018-05-01)

• Initial release in Bioconductor 3.7

OmaDB 0.99.9 (2017-10-14)

• Initial release to Bioconductor development