Package: OVESEG
Type: Package
Title: OVESEG-test to detect tissue/cell-specific markers
Version: 1.29.0
Author: Lulu Chen <luluchen@vt.edu>
Maintainer: Lulu Chen <luluchen@vt.edu>
biocViews: Software, MultipleComparison, CellBiology, GeneExpression
Description: An R package for multiple-group comparison to detect
        tissue/cell-specific marker genes among subtypes. It provides
        functions to compute OVESEG-test statistics, derive component
        weights in the mixture null distribution model and estimate
        p-values from weightedly aggregated permutations. Obtained
        posterior probabilities of component null hypotheses can also
        portrait all kinds of upregulation patterns among subtypes.
License: GPL-2
Encoding: UTF-8
Depends: R (>= 3.6)
Suggests: knitr, rmarkdown, BiocStyle, testthat, ggplot2, gridExtra,
        grid, reshape2, scales
VignetteBuilder: knitr
Imports: stats, utils, methods, BiocParallel, SummarizedExperiment,
        limma, fdrtool, Rcpp
BugReports: https://github.com/Lululuella/OVESEG
RoxygenNote: 6.1.1
LinkingTo: Rcpp
SystemRequirements: C++11
Config/pak/sysreqs: zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:49:23 UTC
RemoteUrl: https://github.com/bioc/OVESEG
RemoteRef: HEAD
RemoteSha: 45a3e56b444bd4b861ec9c2f1173378c815a02ca
NeedsCompilation: yes
Packaged: 2026-07-04 21:05:21 UTC; root