NEWS
OUTRIDER 1.22.0
- Add Manhattenplot functionallity
- Bugfix in restricting for FDR correction and others (#54 and aa6e56a)
- Ensure correct injections of outliers (#37)
OUTRIDER 1.16.1
- Add option to restrict FDR correction to sets of genes of interest
- Add opttion to retrieve results based on those FDR values on subsets of
genes
OUTRIDER 1.7.1
- Move to S3/S4 methods to be compatible with FRASER
- Due to the S3/S4 changes minor changes in the argument names happend
mainly ods -> object or x
- Bugfixes: #29
OUTRIDER 1.3.5
- Change plotAberrantPerSample from base-R to ggplot2
- Add plotSizeFactors
- Minor aesthetic changes in plotting
- Update documentation
OUTRIDER 1.3.2
- Documentation
- New plot functionality
- plotExpectedVsObservedCounts()
- plotCountGeneSampleHeatmap()
- plotExpressedGenes()
- Minor bug fixes
- Linking to publication
REVISED VERSION 0.99.29
- Major changes
- Improved autoencoder model.
- Updated API
- Improved default parameters.
SECOND BIOCONDUCTOR SUBMISSION 0.99.10
- Smaller and faster example data set
- Loss and gradient of loss in C++
- Bugfixes
INITIAL BIOCONDUCTOR SUBMISSION 0.99.8
- Better documentation
- Little changes in default values
- Code cleanup and improvements
- Bugfixes
R IMPLEMENTATION OF THE AUTOENCODER 0.99.7
- Adding the R implementation of the autoencoder
- Little changes in default values
- Updating and completing documentation
- Bugfixes
MINOR BUGFIXES AND UPDATE OF AUTOCORRECTION 0.99.6
- Minor changes in plotting functions
- Update interface to autoCorrection
- Bugfixes
GITHUB RELEASE OF OUTRIDER 0.99.5
- Pre-release of OUTRIDER on GitHub
INITIAL SETUP OF OUTRIDER VERSION 0.99.2
- Initial setup of OUTRIDER package
- Added autoCorrect (Auto Encoder) as normalization function