Package: OSCA.workflows
Title: OSCA Workflows
Version: 1.21.0
Date: 2025-10-10
Authors@R: c( 
        person('Robert', 'Amezquita', role = 'aut'), 
        person('Aaron', 'Lun', role = 'aut', email="infinite.monkeys.with.keyboards@gmail.com"), 
        person('Stephanie', 'Hicks', role = 'aut'), 
        person('Raphael', 'Gottardo', role = 'aut'),
        person('Peter', 'Hickey', role = 'cre', email="peter.hickey@gmail.com")
    )
Description: Deploys the workflows of the "Orchestrating Single Cell
        Analysis with Bioconductor" book. This contains worked case
        studies of analyses of a variety of single-cell datasets, each
        proceeding from a SingleCellExperiment object. Exposition is
        generally minimal other than for dataset-specific
        justifications for parameter tweaks; refer to the other books
        in the OCSA collection for a detailed explanation of the
        theoretical basis of each step. It is intended for readers who
        already know the background and just want some code to copy and
        paste into their own analyses.
Depends: AnnotationHub, batchelor, BiocFileCache, BiocNeighbors,
        BiocParallel, BiocSingular, bluster, celldex, cluster,
        DropletTestFiles, DropletUtils, dynamicTreeCut, edgeR,
        EnsDb.Hsapiens.v86, gridExtra, HCAData, igraph, limma,
        org.Hs.eg.db, org.Mm.eg.db, pheatmap, rebook, rmarkdown,
        scater, scPCA, scran, scRNAseq, scuttle, SingleR, viridis
Suggests: BiocManager, rmarkdown, knitr
VignetteBuilder: knitr
License: CC BY 4.0
URL: https://github.com/OSCA-source/OSCA.workflows
biocViews: ImmunoOncologyWorkflow, Workflow, SingleCellWorkflow
Config/pak/sysreqs: cmake libglpk-dev make libbz2-dev libicu-dev
        liblzma-dev libpng-dev libuv1-dev libxml2-dev libssl-dev
        libnode-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:53:42 UTC
RemoteUrl: https://github.com/bioc/OSCA.workflows
RemoteRef: HEAD
RemoteSha: b4be006c213b7d0f93a78e490088ba890d641fab
NeedsCompilation: no
Packaged: 2026-10-10 10:57:02 UTC; root
Author: Robert Amezquita [aut],
  Aaron Lun [aut],
  Stephanie Hicks [aut],
  Raphael Gottardo [aut],
  Peter Hickey [cre]
Maintainer: Peter Hickey <peter.hickey@gmail.com>