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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "ORFik" in publications use:'
type: software
license: MIT
title: 'ORFik: Open Reading Frames in Genomics'
version: 1.25.4
doi: 10.1186/s12859-021-04254-w
identifiers:
- type: doi
  value: 10.32614/CRAN.package.ORFik
abstract: R package for analysis of transcript and translation features through manipulation
  of sequence data and NGS data like Ribo-Seq, RNA-Seq, TCP-Seq and CAGE. It is generalized
  in the sense that any transcript region can be analysed, as the name hints to it
  was made with investigation of ribosomal patterns over Open Reading Frames (ORFs)
  as it's primary use case. ORFik is extremely fast through use of C++, data.table
  and GenomicRanges. Package allows to reassign starts of the transcripts with the
  use of CAGE-Seq data, automatic shifting of RiboSeq reads, finding of Open Reading
  Frames for whole genomes and much more.
authors:
- family-names: Tjeldnes
  given-names: Haakon
  email: hauken_heyken@hotmail.com
- family-names: Labun
  given-names: Kornel
  email: kornellabun@gmail.com
preferred-citation:
  type: article
  title: 'ORFik: a comprehensive R toolkit for the analysis of translation'
  authors:
  - name: Tjeldnes
  - name: Håkon
  - name: Labun
  - name: Kornel
  - family-names: Cleuren
    given-names: Torres
  - name: Yamila
  - name: Chyżyńska
  - name: Katarzyna
  - name: Świrski
  - name: Michał
  - name: Valen
  - name: Eivind
  year: '2021'
  journal: BMC Bioinformatics
  doi: 10.1186/s12859-021-04254-w
repository: https://bioc.r-universe.dev
repository-code: https://github.com/Roleren/ORFik
commit: a2c516824a9d5a677df57e49558a4352dcc0bbfc
url: https://github.com/Roleren/ORFik
contact:
- family-names: Tjeldnes
  given-names: Haakon
  email: hauken_heyken@hotmail.com