Package: OAtools
Title: Analysis of OpenArray PCR Data
Version: 1.1.0
Description: Provides a suite of R functions to analyze gene expression
        experiments on the OpenArray real-time PCR platform. OAtools
        fits logistic regressions to fluorescence curves to distinguish
        between real amplification and false positives. OAtools
        supports data import, analysis, and visualization through plots
        and a dynamic HTML report.
Authors@R: 
    person("Aidan", "Shea", 
    email = "aidantshea@gmail.com", 
    role = c("aut", "cre"),
    comment = c(ORCID = "0009-0001-9256-7439"))
License: GPL (>= 3)
LazyData: FALSE
Depends: R (>= 4.5)
Imports: basilisk (>= 1.20.0), Biobase (>= 2.70.0), dplyr (>= 1.1.4),
        DT (>= 0.34.0), ggplot2 (>= 3.5.2), janitor (>= 2.2.1), methods
        (>= 4.5.2), plotly (>= 4.11.0), purrr (>= 1.2.0), ReadqPCR (>=
        1.56.0), readxl (>= 1.4.5), reticulate (>= 1.43.0), rlang (>=
        1.1.6), rmarkdown (>= 2.29), S4Vectors (>= 0.48.0), shiny (>=
        1.13.0), SummarizedExperiment (>= 1.40.0), tibble (>= 3.3.0),
        tidyr (>= 1.3.1), writexl (>= 1.5.4)
Suggests: testthat (>= 3.0.0), knitr, kableExtra (>= 1.4.0), NormqPCR
        (>= 1.56.0), BiocManager (>= 1.30.27)
biocViews: qPCR, GeneExpression, DataImport, Regression
BugReports: https://github.com/uwvirology-ngs/OAtools/issues
URL: https://github.com/uwvirology-ngs/OAtools
BiocType: Software
Config/testthat/edition: 3
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Encoding: UTF-8
VignetteBuilder: knitr
StagedInstall: no
Config/Bioconductor/UnsupportedPlatforms: windows-x86
Config/pak/sysreqs: cmake make libicu-dev libpng-dev libuv1-dev
        libssl-dev python3 zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 13:06:25 UTC
RemoteUrl: https://github.com/bioc/OAtools
RemoteRef: HEAD
RemoteSha: 725e42103a44b8b9abc687cd2886a4baeed57d09
NeedsCompilation: no
Packaged: 2026-05-30 09:50:22 UTC; root
Author: Aidan Shea [aut, cre] (ORCID: <https://orcid.org/0009-0001-9256-7439>)
Maintainer: Aidan Shea <aidantshea@gmail.com>