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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "NxtIRFdata" in publications use:'
type: software
license: MIT
title: 'NxtIRFdata: Data for NxtIRF'
version: 1.19.0
doi: 10.1186/s13059-017-1184-4
identifiers:
- type: doi
  value: 10.32614/CRAN.package.NxtIRFdata
abstract: NxtIRFdata is a companion package for SpliceWiz, an interactive analysis
  and visualization tool for alternative splicing quantitation (including intron retention)
  for RNA-seq BAM files. NxtIRFdata contains Mappability files required for the generation
  of human and mouse references. NxtIRFdata also contains a synthetic genome reference
  and example BAM files used to demonstrate SpliceWiz's functionality. BAM files are
  based on 6 samples from the Leucegene dataset provided by NCBI Gene Expression Omnibus
  under accession number GSE67039.
authors:
- family-names: Wong
  given-names: Alex Chit Hei
  email: alexchwong.github@gmail.com
preferred-citation:
  type: article
  title: 'IRFinder: assessing the impact of intron retention on mammalian gene expression'
  authors:
  - family-names: Middleton
    given-names: Robert
  - family-names: Gao
    given-names: Dadi
  - family-names: Thomas
    given-names: Aubin
  - family-names: Singh
    given-names: Babita
  - family-names: Au
    given-names: Amy
  - family-names: Wong
    given-names: Justin J-L
  - family-names: Bomane
    given-names: Alexandra
  - family-names: Cosson
    given-names: Bertrand
  - family-names: Eyras
    given-names: Eduardo
  - family-names: Rasko
    given-names: John E. J.
  - family-names: Ritchie
    given-names: William
  year: '2017'
  journal: Genome Biology
  doi: 10.1186/s13059-017-1184-4
  volume: '18'
  issue: '1'
  start: '51'
repository: https://bioc.r-universe.dev
repository-code: https://github.com/alexchwong/NxtIRFdata
commit: 590b5e7a3b0dc1627344532baa64d7bd08e2e96c
url: https://support.bioconductor.org/
date-released: '2024-09-07'
contact:
- family-names: Wong
  given-names: Alex Chit Hei
  email: alexchwong.github@gmail.com