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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "NuPoP" in publications use:'
type: software
license: GPL-2.0-only
title: 'NuPoP: An R package for nucleosome positioning prediction'
version: 2.13.0
abstract: 'NuPoP is an R package for Nucleosome Positioning Prediction.This package
  is built upon a duration hidden Markov model proposed in Xi et al, 2010; Wang et
  al, 2008. The core of the package was written in Fotran. In addition to the R package,
  a stand-alone Fortran software tool is also available at https://github.com/jipingw.
  The Fortran codes have complete functonality as the R package. Note: NuPoP has two
  separate functions for prediction of nucleosome positioning, one for MNase-map trained
  models and the other for chemical map-trained models. The latter was implemented
  for four species including yeast, S.pombe, mouse and human, trained based on our
  recent publications. We noticed there is another package nuCpos by another group
  for prediction of nucleosome positioning trained with chemicals. A report to compare
  recent versions of NuPoP with nuCpos can be found at https://github.com/jiping/NuPoP_doc.
  Some more information can be found and will be posted at https://github.com/jipingw/NuPoP.'
authors:
- family-names: Wang
  given-names: Ji-Ping
  email: jzwang@northwestern.edu
- email: zarate@u.northwestern.edu
repository: https://bioc.r-universe.dev
date-released: '2020-11-21'
contact:
- family-names: Wang
  given-names: Ji-Ping
  email: jzwang@northwestern.edu