Package: NewWave
Type: Package
Title: Negative binomial model for scRNA-seq
Version: 1.23.0
Authors@R: c(person("Federico", "Agostinis", role = c("aut", "cre"),
                    email = "federico.agostinis@outlook.com"),
             person("Chiara", "Romualdi", role = "aut"),
             person("Gabriele", "Sales", role = "aut"),
             person("Davide", "Risso", role = "aut"))
Description: A model designed for dimensionality reduction and batch
        effect removal for scRNA-seq data. It is designed to be
        massively parallelizable using shared objects that prevent
        memory duplication, and it can be used with different
        mini-batch approaches in order to reduce time consumption. It
        assumes a negative binomial distribution for the data with a
        dispersion parameter that can be both commonwise across gene
        both genewise.
Depends: R (>= 4.0), SummarizedExperiment
Imports: methods, SingleCellExperiment, parallel, irlba, Matrix,
        DelayedArray, BiocSingular, SharedObject, stats
Suggests: testthat, rmarkdown, splatter, mclust, Rtsne, ggplot2, Rcpp,
        BiocStyle, knitr
License: GPL-3
VignetteBuilder: knitr
biocViews: Software, GeneExpression, Transcriptomics, SingleCell,
        BatchEffect, Sequencing, Coverage, Regression
Encoding: UTF-8
RoxygenNote: 7.1.1
BugReports: https://github.com/fedeago/NewWave/issues
Config/pak/sysreqs: zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:54:26 UTC
RemoteUrl: https://github.com/bioc/NewWave
RemoteRef: HEAD
RemoteSha: 79ebef3a81c53e963217fa77c7a697d8c40a3193
NeedsCompilation: no
Packaged: 2026-05-30 09:38:28 UTC; root
Author: Federico Agostinis [aut, cre],
  Chiara Romualdi [aut],
  Gabriele Sales [aut],
  Davide Risso [aut]
Maintainer: Federico Agostinis <federico.agostinis@outlook.com>