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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "NetPathMiner" in publications use:'
type: software
license: GPL-2.0-or-later
title: 'NetPathMiner: NetPathMiner for Biological Network Construction, Path Mining
  and Visualization'
version: 1.41.3
identifiers:
- type: doi
  value: 10.32614/CRAN.package.NetPathMiner
abstract: NetPathMiner is a general framework for network path mining using genome-scale
  networks. It constructs networks from KGML, SBML and BioPAX files, providing three
  network representations, metabolic, reaction and gene representations. NetPathMiner
  finds active paths and applies machine learning methods to summarize found paths
  for easy interpretation. It also provides static and interactive visualizations
  of networks and paths to aid manual investigation.
authors:
- family-names: Mohamed
  given-names: Ahmed
  email: mohamed@kuicr.kyoto-u.ac.jp
  orcid: https://orcid.org/0000-0001-6507-5300
- family-names: Hancock
  given-names: Tim
  email: timothy.hancock@kuicr.kyoto-u.ac.jp
preferred-citation:
  type: article
  title: 'NetPathMiner: R/Bioconductor package for network path mining through gene
    expression'
  authors:
  - family-names: Mohamed
    given-names: Ahmed
    email: mohamed@kuicr.kyoto-u.ac.jp
    orcid: https://orcid.org/0000-0001-6507-5300
  - family-names: Hancock
    given-names: Timothy
  - family-names: Nguyen
    given-names: Canh Hao
  - family-names: Mamitsuka
    given-names: Hiroshi
  journal: Bioinformatics
  volume: '30'
  issue: '21'
  year: '2014'
  start: 3139-3141
repository: https://bioc.r-universe.dev
repository-code: https://github.com/ahmohamed/NetPathMiner
commit: 123037f8abe8476221b7ca342964fd505e8cfd04
url: https://github.com/ahmohamed/NetPathMiner
contact:
- family-names: Mohamed
  given-names: Ahmed
  email: mohamed@kuicr.kyoto-u.ac.jp
  orcid: https://orcid.org/0000-0001-6507-5300