NEWS

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NetPathMiner 1.19.1

• Added a new function to create a metabolite network.
• Added a new function to reindex networks using vertex attributes.
• Removed compiler warnings.
• Fixed various bugs in network manipulation.

NetPathMiner 1.3.1

• Fixed a bug SBML2igraph (metabolic).

NetPathMiner 1.1.6

• plotCytoscapeGML: a new function to export network plots as GML files, for Cytoscape 3.0 compatibility.
• getGetsetNetworks now can return pathway-class objects, used by graphite package, which allows fast topology-based geneset analyses.
• getGenesets now can export the results in GMT file format, readily parsed by most GSEA packages.
• Bug fixes on KGML signaling network construction.

NetPathMiner 1.1.3

• Bioconductor stable release on the development branch