Package: NetPathMiner
Version: 1.49.1
Date: 2014 onwards
Title: NetPathMiner for Biological Network Construction, Path Mining
        and Visualization
Authors@R: c(
    person("Ahmed", "Mohamed", , "mohamed@kuicr.kyoto-u.ac.jp", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-6507-5300")),
    person("Tim", "Hancock", , "timothy.hancock@kuicr.kyoto-u.ac.jp", role = c("aut")),
    person("Tim", "Hancock", , "timothy.hancock@kuicr.kyoto-u.ac.jp", role = c("aut"))
    )
Description: NetPathMiner is a general framework for network path
        mining using genome-scale networks. It constructs networks from
        KGML, SBML and BioPAX files, providing three network
        representations, metabolic, reaction and gene representations.
        NetPathMiner finds active paths and applies machine learning
        methods to summarize found paths for easy interpretation. It
        also provides static and interactive visualizations of networks
        and paths to aid manual investigation.
Depends: R (>= 3.0.2), igraph (>= 1.0)
Suggests: rBiopaxParser (>= 2.1), RCurl, graph, knitr, rmarkdown,
        BiocStyle
VignetteBuilder: knitr
License: GPL (>= 2)
URL: https://github.com/ahmohamed/NetPathMiner
NeedsCompilation: yes
SystemRequirements: libxml2, libSBML (>= 5.5)
Biarch: TRUE
biocViews: GraphAndNetwork, Pathways, Network, Clustering,
        Classification
RoxygenNote: 7.2.3
Encoding: UTF-8
Config/Bioconductor/UnsupportedPlatforms: windows
Config/pak/sysreqs: libglpk-dev libxml2-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-05-29 18:37:07 UTC
RemoteUrl: https://github.com/bioc/NetPathMiner
RemoteRef: HEAD
RemoteSha: 0421150dede87b90971ec447d8dccb263e0401e9
Packaged: 2026-06-23 19:15:13 UTC; root
Author: Ahmed Mohamed [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-6507-5300>),
  Tim Hancock [aut],
  Tim Hancock [aut]
Maintainer: Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp>