Package: NanoporeRNASeq
Type: Package
Title: Nanopore RNA-Seq Example data
Version: 1.23.1
Authors@R: c(person("Jonathan", "Goeke", role = "aut",
                    email = "Jonathan_GOEKE@a-star.edu.sg"),
            person("Ying", "Chen", role = "cre",
                    email = "chen_ying@gis.a-star.edu.sg"),
            person("Yuk Kei","Wan", role = "aut",
                    email = "yukkeiwan622@gmail.com"))
Description: The NanoporeRNASeq package contains long read RNA-Seq data
        generated using Oxford Nanopore Sequencing. The data consists
        of 6 samples from two human cell lines (K562 and MCF7) that
        were generated by the SG-NEx project. Each of these cell lines
        has three replicates, with 1 direct RNA sequencing data and 2
        cDNA sequencing data. Reads are aligned to chromosome 22
        (Grch38) and stored as bam files. The original data is from the
        SG-NEx project.
License: GPL-3 + file LICENSE
Encoding: UTF-8
LazyData: true
Depends: R(>= 4.0.0), ExperimentHub (>= 1.15.3)
Suggests: knitr, bambu, ggbio, BSgenome.Hsapiens.NCBI.GRCh38, circlize,
        ComplexHeatmap, apeglm, rlang, rmarkdown, GenomicAlignments,
        Rsamtools
Enhances: parallel
SystemRequirements:
biocViews: ExperimentHub, ExperimentData, RNASeqData, Genome,
        SequencingData
bugReports: https://github.com/GoekeLab/NanoporeRNASeq/issues
URL: https://github.com/GoekeLab/NanoporeRNASeq
RoxygenNote: 7.1.1
VignetteBuilder: knitr
Config/pak/sysreqs: libicu-dev libpng-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-10-01 09:48:47 UTC
RemoteUrl: https://github.com/bioc/NanoporeRNASeq
RemoteRef: HEAD
RemoteSha: 5994e53262d5c5c0f57dff77778a2e29233d1b91
NeedsCompilation: no
Packaged: 2026-10-10 10:44:37 UTC; root
Author: Jonathan Goeke [aut],
  Ying Chen [cre],
  Yuk Kei Wan [aut]
Maintainer: Ying Chen <chen_ying@gis.a-star.edu.sg>