Package: NanoTube
Type: Package
Title: An Easy Pipeline for NanoString nCounter Data Analysis
Version: 1.19.0
Date: 2023-05-31
Authors@R: c(person("Caleb", "Class", email="cclass@butler.edu",
                  role = c("cre", "aut"), 
                  comment = c(ORCID = "0000-0003-3130-3613")),
             person("Caiden", "Lukan", role = "ctb"))
Depends: R (>= 4.1), Biobase, ggplot2, limma
Imports: fgsea, methods, reshape, stats, utils
Suggests: grid, kableExtra, knitr, NanoStringDiff, pheatmap, plotly,
        rlang, rmarkdown, ruv, RUVSeq, shiny, testthat, xlsx
VignetteBuilder: knitr
Description: NanoTube includes functions for the processing, quality
        control, analysis, and visualization of NanoString nCounter
        data. Analysis functions include differential analysis and gene
        set analysis methods, as well as postprocessing steps to help
        understand the results. Additional functions are included to
        enable interoperability with other Bioconductor NanoString data
        analysis packages.
License: GPL-3 + file LICENSE
Encoding: UTF-8
LazyData: false
RoxygenNote: 7.2.1
biocViews: Software, GeneExpression, DifferentialExpression,
        QualityControl
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:56:22 UTC
RemoteUrl: https://github.com/bioc/NanoTube
RemoteRef: HEAD
RemoteSha: cf02f2e565efab61e4cd8a7c9581da105669f795
NeedsCompilation: no
Packaged: 2026-07-04 23:24:19 UTC; root
Author: Caleb Class [cre, aut] (ORCID: <https://orcid.org/0000-0003-3130-3613>),
  Caiden Lukan [ctb]
Maintainer: Caleb Class <cclass@butler.edu>