To cite package ‘NOISeq’ in publications use:

  Tarazona, S., Garcia-Alcalde, F., Dopazo, J., Ferrer, A., & Conesa,
  A. (2011). Differential expression in RNA-seq: a matter of depth.
  Genome Research, 21(12), 2213-2223.

A BibTeX entry for LaTeX users is

  @Article{,
    title = {Differential expression in RNA-seq: a matter of depth},
    author = {Sonia Tarazona and Fernando Garcia-Alcalde and Joaquin Dopazo and Alberto Ferrer and Ana Conesa},
    journal = {Genome Research},
    volume = {21},
    number = {12},
    pages = {4436},
    year = {2011},
  }

  Tarazona, S., Furio-Tari, P., Turra, D., Di Pietro, A., Nueda, M.J.,
  Ferrer, A., & Conesa, A. (2015). Data quality aware analysis of
  differential expression in RNA-seq with NOISeq R/Bioc package.
  Nucleic Acids Research.

A BibTeX entry for LaTeX users is

  @Article{,
    title = {Data quality aware analysis of differential expression in RNA-seq with NOISeq R/Bioc package},
    author = {Sonia Tarazona and Pedro Furio-Tari and David Turra and Antonio Di Pietro and Maria Jose Nueda and Alberto Ferrer and Ana Conesa},
    journal = {Nucleic Acids Research},
    volume = {43},
    number = {21},
    pages = {e140},
    year = {2015},
  }