Package 'NCIgraphData'

Title: Data for the NCIgraph software package
Description: Provides pathways from the NCI Pathways Database as R graph objects
Authors: Laurent Jacob
Maintainer: Laurent Jacob <[email protected]>
License: GPL-3
Version: 1.49.0
Built: 2026-10-10 10:29:51 UTC
Source: https://github.com/bioc/NCIgraphData

Help Index

Raw NCI networks from Nature curated pathways and BioCarta imported as graphNEL objects

Description

A list of graphNEL objects read from Cytoscape using the CytoscapeRPC Cytoscape plugin in combination with the RCytoscape bioconductor package. This list contains 460 of the NCI-Nature curated and BioCarta imported pathways of the NCI PID.

Usage

NCI.cyList

Format

A list of 460 graphNEL objects.

Author(s)

Laurent Jacob

Examples

data("NCI-cyList")
length(NCI.cyList)

library(Rgraphviz)
plot(NCI.cyList[[1]])

Raw NCI networks from reactome as graphNEL objects

Description

A list of graphNEL objects read from Cytoscape using the CytoscapeRPC Cytoscape plugin in combination with the RCytoscape bioconductor package. This list contains 487 of the Reactome pathways of the NCI PID.

Usage

reactome.cyList

Format

A list of 460 graphNEL objects.

Author(s)

Laurent Jacob

Examples

data("reactome-cyList")
length(reactome.cyList)

library(Rgraphviz)
plot(reactome.cyList[[1]])