# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "MutSeqR" in publications use:'
type: software
license: MIT
title: 'MutSeqR: Analysis of Error-Corrected Sequencing Data for Mutation Detection'
version: 1.1.0
doi: 10.1093/bioadv/vbaf265
identifiers:
- type: doi
  value: 10.32614/CRAN.package.MutSeqR
abstract: Standard methods for analysis of mutation data following error- corrected
  sequencing (ECS) for the purpose of mutagencity assessment. Functions include importing
  the mutation lists provided by a variant caller, and a set of analytical tools for
  statistical testing and visualization of mutation data; comparison to COSMIC and/or
  germline signatures; etc.
authors:
- family-names: Dodge
  given-names: Annette E.
  email: annette.dodge@hc-sc.gc.ca
  orcid: https://orcid.org/0000-0002-0446-9055
- family-names: Williams
  given-names: Andrew
  orcid: https://orcid.org/0000-0002-7637-7686
- family-names: LeBlanc
  given-names: Danielle P.M.
  orcid: https://orcid.org/0000-0002-3847-8371
- family-names: Schuster
  given-names: David M.
  orcid: https://orcid.org/0009-0001-6316-4358
- family-names: Esina
  given-names: Elena
  orcid: https://orcid.org/0009-0002-3443-378X
- family-names: Valentine
  given-names: Clint C.
  orcid: https://orcid.org/0000-0001-5630-7368
- family-names: Salk
  given-names: Jesse J.
  orcid: https://orcid.org/0000-0002-7804-0550
- family-names: Maslov
  given-names: Alexander Y.
- family-names: Bradley
  given-names: Christopher
- family-names: Yauk
  given-names: Carole L.
  orcid: https://orcid.org/0000-0002-6725-3454
- family-names: Marchetti
  given-names: Francesco
  orcid: https://orcid.org/0000-0002-9435-4867
- family-names: Meier
  given-names: Matthew J.
  email: matthew.meier@hc-sc.gc.ca
  orcid: https://orcid.org/0000-0001-8199-8754
preferred-citation:
  type: article
  title: 'MutSeqR: an open source R package for standardized analysis of error-corrected
    next-generation sequencing data in genetic toxicology'
  authors:
  - family-names: Dodge
    given-names: Annette E.
    email: annette.dodge@hc-sc.gc.ca
    orcid: https://orcid.org/0000-0002-0446-9055
  - family-names: Williams
    given-names: Andrew
    orcid: https://orcid.org/0000-0002-7637-7686
  - family-names: LeBlanc
    given-names: Danielle P.M.
    orcid: https://orcid.org/0000-0002-3847-8371
  - family-names: Schuster
    given-names: David M.
    orcid: https://orcid.org/0009-0001-6316-4358
  - family-names: Esina
    given-names: Elena
    orcid: https://orcid.org/0009-0002-3443-378X
  - family-names: Valentine
    given-names: Clint C.
    orcid: https://orcid.org/0000-0001-5630-7368
  - family-names: Salk
    given-names: Jesse J.
    orcid: https://orcid.org/0000-0002-7804-0550
  - family-names: Maslov
    given-names: Alexander Y.
  - family-names: Yauk
    given-names: Carole L.
    orcid: https://orcid.org/0000-0002-6725-3454
  - family-names: Marchetti
    given-names: Francesco
    orcid: https://orcid.org/0000-0002-9435-4867
  - family-names: Meier
    given-names: Matthew J.
    email: matthew.meier@hc-sc.gc.ca
    orcid: https://orcid.org/0000-0001-8199-8754
  journal: Bioinformatic Advances
  year: '2025'
  volume: '5'
  issue: '1'
  doi: 10.1093/bioadv/vbaf265
repository: https://bioc.r-universe.dev
repository-code: https://github.com/EHSRB-BSRSE-Bioinformatics/MutSeqR
commit: 99d54af33c2e9ac45b8928eecca49f089630ad3c
url: https://ehsrb-bsrse-bioinformatics.github.io/MutSeqR/
date-released: '2025-12-09'
contact:
- family-names: Meier
  given-names: Matthew J.
  email: matthew.meier@hc-sc.gc.ca
  orcid: https://orcid.org/0000-0001-8199-8754