Package: MultiAssaySpatialExperiment
Version: 0.99.12
Date: 2026-08-30
Title: Multi-Assay Experiment with Spatial Context
Description: Extends MultiAssayExperiment with spatial context elements
        (images, labels, points, shapes) for integrative analysis of
        spatially resolved multi-omics data. Supports coercion to and
        from SpatialExperiment and SpatialFeatureExperiment.
Authors@R: 
    c(
        person("Patrick", "Aboyoun", role=c("aut", "cre"), email="aboyounp@gene.com"),
        person("Genentech, Inc.", role="cph")
    )
License: MIT + file LICENSE
URL: https://github.com/Genentech/MultiAssaySpatialExperiment
BugReports: https://github.com/Genentech/MultiAssaySpatialExperiment/issues
Encoding: UTF-8
Depends: R (>= 4.5.0), methods, MultiAssayExperiment
Imports: tools, BiocGenerics, BiocParallel, S4Vectors, MatrixGenerics,
        SummarizedExperiment, SingleCellExperiment, SpatialExperiment,
        sf
Suggests: knitr, rmarkdown, BiocStyle, testthat, arrow, DropletUtils,
        jsonlite, sfarrow, terra, ggplot2, Matrix, RBioFormats,
        SpatialFeatureExperiment, spdep, zellkonverter
biocViews: Infrastructure, DataRepresentation, Spatial
VignetteBuilder: knitr
Collate: 'SpatialGenerics.R' 'SpatialLayerList-class.R'
        'MultiAssaySpatialExperiment-class.R'
        'MultiAssaySpatialExperiment-SpatialExperiment.R'
        'MultiAssaySpatialExperiment-SpatialFeatureExperiment.R'
        'MultiAssaySpatialExperiment-combine.R'
        'MultiAssaySpatialExperiment-spatialMap.R'
        'MultiAssaySpatialExperiment-helpers.R'
        'MultiAssaySpatialExperiment-package.R'
        'MultiAssaySpatialExperiment-read-components.R'
        'MultiAssaySpatialExperiment-read-config.R'
        'MultiAssaySpatialExperiment-read-cosmx.R'
        'MultiAssaySpatialExperiment-read-generics.R'
        'MultiAssaySpatialExperiment-read-helpers.R'
        'MultiAssaySpatialExperiment-read-merscope.R'
        'MultiAssaySpatialExperiment-read-visium.R'
        'MultiAssaySpatialExperiment-read-visiumhd.R'
        'MultiAssaySpatialExperiment-read-xenium.R'
        'MultiAssaySpatialExperiment-subset.R' 'spatial-aggregate.R'
        'spatial-annotate.R' 'spatial-operations.R'
        'spatial-raster-convert.R' 'zzz.R'
Config/roxygen2/version: 8.1.0
Config/pak/sysreqs: libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev
        libmagick++-dev gsfonts libicu-dev libssl-dev libproj-dev
        libsqlite3-dev libudunits2-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-08-30 21:54:15 UTC
RemoteUrl: https://github.com/bioc/MultiAssaySpatialExperiment
RemoteRef: HEAD
RemoteSha: 02ad0731b6263fbe885001b854cccaf2d20b0fe1
NeedsCompilation: no
Packaged: 2026-10-20 10:45:24 UTC; root
Author: Patrick Aboyoun [aut, cre],
  Genentech, Inc. [cph]
Maintainer: Patrick Aboyoun <aboyounp@gene.com>