Package: MsBackendSql
Title: SQL-based Mass Spectrometry Data Backend
Version: 1.13.0
Authors@R: 
    c(person(given = "Johannes", family = "Rainer",
             email = "Johannes.Rainer@eurac.edu",
             role = c("aut", "cre"),
             comment = c(ORCID = "0000-0002-6977-7147")),
      person(given = "Chong", family = "Tang",
             email = "chong.tang@uclouvain.be",
	     role = "ctb"),
      person(given = "Laurent", family = "Gatto",
             email = "laurent.gatto@uclouvain.be",
	     role = "ctb",
	     comment = c(ORCID = "0000-0002-1520-2268")))
Description: SQL-based mass spectrometry (MS) data backend supporting
        also storange and handling of very large data sets. Objects
        from this package are supposed to be used with the Spectra
        Bioconductor package. Through the MsBackendSql with its minimal
        memory footprint, this package thus provides an alternative MS
        data representation for very large or remote MS data sets.
Depends: R (>= 4.2.0), Spectra (>= 1.19.8)
Imports: BiocParallel, S4Vectors, methods, ProtGenerics (>= 1.35.3),
        DBI, MsCoreUtils, IRanges, data.table, progress, stringi,
        fastmatch, BiocGenerics
Suggests: testthat, knitr (>= 1.1.0), roxygen2, BiocStyle (>= 2.5.19),
        RSQLite, MsDataHub, rmarkdown, microbenchmark, mzR
License: Artistic-2.0
Encoding: UTF-8
VignetteBuilder: knitr
BugReports: https://github.com/RforMassSpectrometry/MsBackendSql/issues
URL: https://github.com/RforMassSpectrometry/MsBackendSql
biocViews: Infrastructure, MassSpectrometry, Metabolomics, DataImport,
        Proteomics
Roxygen: list(markdown=TRUE)
RoxygenNote: 7.3.3
Collate: 'MsBackendSql-functions.R' 'MsBackendSql.R'
        'MsBackendOfflineSql.R'
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:59:36 UTC
RemoteUrl: https://github.com/bioc/MsBackendSql
RemoteRef: HEAD
RemoteSha: 596d363d1650e7750c49fd32d1c027f5e843d94b
NeedsCompilation: no
Packaged: 2026-07-04 09:31:50 UTC; root
Author: Johannes Rainer [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-6977-7147>),
  Chong Tang [ctb],
  Laurent Gatto [ctb] (ORCID: <https://orcid.org/0000-0002-1520-2268>)
Maintainer: Johannes Rainer <Johannes.Rainer@eurac.edu>