NEWS
MoonlightR 1.26.1
BUG FIX
- changed arguments for downloading datasets following updates to TCGAbiolinks
- added suggested package to fix install crash
FIRST VERSION - FEATURES
* dataFilt Gene Expression (Rnaseqv2) data from TCGA LUAD
* dataGRN GRN gene regulatory network output
* dataURA Output example from function Upstram Regulator Analysis
* DEGsmatrix DEG Differentially expressed genes
* DiseaseList Information on 101 biological processes
* DPA DPA
* EAGenes Information about genes
* FEA FEA
* GDCprojects Information on GDC projects
* geneInfo Information about genes for normalization
* GEO_TCGAtab Information on GEO data (and overlap with TCGA)
* getDataGEO getDataGEO
* getDataTCGA getDataTCGA
* GRN Generate network
* GSEA GSEA
* knownDriverGenes Information on known cancer driver gene from COSMIC
* listMoonlight Output list from Moonlight
* LPA LPA
* moonlight moonlight pipeline
* MoonlightR MoonlightR
* PEA PEA
* plotCircos plotCircos
* plotFEA plotFEA
* plotNetworkHive plotNetworkHive: Hive network plot
* plotURA plotURA: Upstream regulatory analysis heatmap plot
* PRA Pattern Recognition Analysis (PRA)
* tabGrowBlock Information growing/blocking characteristics for 101 selected biological processes
* URA URA Upstream Regulator Analysis