To cite Moonlight2R in publications use:

  Colaprico, A., Olsen, C., Bailey, M.H. et al. Interpreting pathways
  to discover cancer driver genes with Moonlight. Nature
  Communications, 2020 January 3; 11(69). DOI:
  10.1038/s41467-019-13803-0

A BibTeX entry for LaTeX users is

  @Article{,
    title = {Interpreting pathways to discover cancer driver genes with Moonlight},
    author = {Antonio Colaprico and Catharina Olsen and Matthew H. Bailey and Gabriel J. Odom and Thilde Terkelsen and Tiago C. Silva and André V. Olsen and Laura Cantini and Andrei Zinovyev and Emmanuel Barillot and Houtan Noushmehr and Gloria Bertoli and Isabella Castiglioni and Claudia Cava and Gianluca Bontempi and Xi Steven Chen and Elena Papaleo},
    journal = {Nature Communications},
    year = {2020},
    volume = {11(69)},
  }

  Nourbakhsh, M., Saksager, A., et al. A workflow to study mechanistic
  indicators for driver gene prediction with Moonlight. Briefings in
  Bioinformatics, 2023, bbad274 DOI: 10.1093/bib/bbad274

A BibTeX entry for LaTeX users is

  @Article{,
    title = {A workflow to study mechanistic indicators for driver gene prediction with Moonlight},
    author = {Mona Nourbakhsh and Astrid Saksager and Nikola Tom and Xi Steven Chen and Antonio Colaprico and Catharina Olsen and Matteo Tiberti and Elena Papaleo},
    journal = {Briefings in Bioinformatics},
    year = {2023},
  }