To cite Moonlight2R in publications use:

Colaprico, A., Olsen, C., Bailey, M.H. et al. Interpreting pathways to discover cancer driver genes with Moonlight. Nature Communications, 2020 January 3; 11(69).<doi:10.1038/s41467-019-13803-0>

Nourbakhsh, M., Saksager, A., et al. A workflow to study mechanistic indicators for driver gene prediction with Moonlight. Briefings in Bioinformatics, 2023, bbad274<doi:10.1093/bib/bbad274>

Corresponding BibTeX entries:

  @Article{,
    title = {Interpreting pathways to discover cancer driver genes with
      Moonlight},
    author = {Antonio Colaprico and Catharina Olsen and Matthew H.
      Bailey and Gabriel J. Odom and Thilde Terkelsen and Tiago C.
      Silva and André V. Olsen and Laura Cantini and Andrei Zinovyev
      and Emmanuel Barillot and Houtan Noushmehr and Gloria Bertoli and
      Isabella Castiglioni and Claudia Cava and Gianluca Bontempi and
      Xi Steven Chen and Elena Papaleo},
    journal = {Nature Communications},
    year = {2020},
    volume = {11(69)},
  }

  @Article{,
    title = {A workflow to study mechanistic indicators for driver gene
      prediction with Moonlight},
    author = {Mona Nourbakhsh and Astrid Saksager and Nikola Tom and Xi
      Steven Chen and Antonio Colaprico and Catharina Olsen and Matteo
      Tiberti and Elena Papaleo},
    journal = {Briefings in Bioinformatics},
    year = {2023},
  }