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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "Modstrings" in publications use:'
type: software
license: Artistic-2.0
title: 'Modstrings: Working with modified nucleotide sequences'
version: 1.21.0
identifiers:
- type: doi
  value: 10.32614/CRAN.package.Modstrings
abstract: Representing nucleotide modifications in a nucleotide sequence is usually
  done via special characters from a number of sources. This represents a challenge
  to work with in R and the Biostrings package. The Modstrings package implements
  this functionallity for RNA and DNA sequences containing modified nucleotides by
  translating the character internally in order to work with the infrastructure of
  the Biostrings package. For this the ModRNAString and ModDNAString classes and derivates
  and functions to construct and modify these objects despite the encoding issues
  are implemenented. In addition the conversion from sequences to list like location
  information (and the reverse operation) is implemented as well.
authors:
- family-names: Ernst
  given-names: Felix G.M.
  email: felix.gm.ernst@outlook.com
  orcid: https://orcid.org/0000-0001-5064-0928
preferred-citation:
  type: manual
  title: 'Modstrings: implementation of Biostrings to work with nucleotide sequences
    containing modified nucleotides'
  authors:
  - family-names: Ernst
    given-names: Felix G.M.
    email: felix.gm.ernst@outlook.com
    orcid: https://orcid.org/0000-0001-5064-0928
  - family-names: Lafontaine
    given-names: Denis L.J.
  year: '2022'
  notes: R package version 1.21.0
repository: https://bioc.r-universe.dev
repository-code: https://github.com/FelixErnst/Modstrings
commit: 9f311d14697c8fc3ccd6ad60cc8ea13807f6811d
url: https://github.com/FelixErnst/Modstrings
date-released: '2022-08-13'
contact:
- family-names: Ernst
  given-names: Felix G.M.
  email: felix.gm.ernst@outlook.com
  orcid: https://orcid.org/0000-0001-5064-0928