Package: MicrobiomeProfiler
Title: An R/shiny package for microbiome functional enrichment analysis
Version: 1.19.2
Authors@R: c(
    person(given = "Guangchuang", family = "Yu", email = "guangchuangyu@gmail.com", role  = c("cre", "aut"), comment = c(ORCID = "0000-0002-6485-8781")),
    person(given = "Meijun",family = "Chen", role = "aut", email = "mjchen1996@outlook.com", comment = c(ORCID = "0000-0003-2486-8106"))    
    )
Description: This is an R/shiny package to perform functional
        enrichment analysis for microbiome data. This package was based
        on clusterProfiler. Moreover, MicrobiomeProfiler support KEGG
        enrichment analysis, COG enrichment analysis, Microbe-Disease
        association enrichment analysis, Metabo-Pathway analysis.
License: GPL-2
Depends: R (>= 4.2.0)
Imports: clusterProfiler (>= 4.5.2), enrichit (>= 0.2.2), config,
        digest, DT, enrichplot, golem, gson, methods, magrittr,
        jsonlite, shiny (>= 1.6.0), shinyWidgets, shinycustomloader,
        htmltools, ggplot2, graphics, stats, utils, yulab.utils
Suggests: rmarkdown, pkgload, knitr, testthat (>= 3.0.0), prettydoc
Encoding: UTF-8
biocViews: Microbiome, Software, Visualization,KEGG
URL: https://github.com/YuLab-SMU/MicrobiomeProfiler/,
        https://yulab-smu.top/contribution-knowledge-mining/
BugReports: https://github.com/YuLab-SMU/MicrobiomeProfiler/issues
Config/testthat/edition: 3
VignetteBuilder: knitr
Config/roxygen2/version: 8.1.0
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libglpk-dev make libicu-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-09-17 04:07:07 UTC
RemoteUrl: https://github.com/bioc/MicrobiomeProfiler
RemoteRef: HEAD
RemoteSha: 921b9123e22507a9e4d564e047054ddb9bf1117d
NeedsCompilation: no
Packaged: 2026-09-18 06:19:37 UTC; root
Author: Guangchuang Yu [cre, aut] (ORCID:
    <https://orcid.org/0000-0002-6485-8781>),
  Meijun Chen [aut] (ORCID: <https://orcid.org/0000-0003-2486-8106>)
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>