To cite package ‘MiRaGE’ in publications use:

  Yoshizawa, Masato; Taguchi, Y-h.; Yasuda, Jun. 2011. Inference of
  Gene Regulation via miRNAs During ES Cell Differentiation Using
  MiRaGE Method. Int. J. Mol. Sci. 12, no. 12: 9265-9276.

A BibTeX entry for LaTeX users is

  @Article{,
    author = {{Yoshizawa} and {M.} and {Taguchi} and Y. H. and {Yasuda} and {J.}},
    title = {{{I}nference of {G}ene {R}egulation via mi{R}{N}{A}s {D}uring {E}{S} {C}ell {D}ifferentiation {U}sing {M}i{R}a{G}{E} {M}ethod}},
    journal = {Int J Mol Sci},
    volume = {12},
    number = {12},
    year = {2011},
    pages = {9265--9276},
    doi = {10.3390/ijms12129265},
  }