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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "MetaProViz" in publications use:'
type: software
license: BSD-3-Clause
title: 'MetaProViz: METabolomics pre-PRocessing, functiOnal analysis and VIZualisation'
version: 4.1.0
doi: 10.1101/2025.08.18.670781
identifiers:
- type: doi
  value: 10.32614/CRAN.package.MetaProViz
abstract: MetaProViz can analyse standard metabolomics and exometabolomics data (CoRe).
  It performs pre-processing including feature filtering, missing value imputation,
  normalisation and outlier detection. It performs functional analysis including differential
  metabolite analysis (DMA), clustering based on regulatory rules (MCA) and contains
  different visualisation methods to extract biological interpretable graphs and saves
  them in a publication ready format.
authors:
- family-names: Schmidt
  given-names: Christina
  email: christina.schmidt.science@gmail.com
  orcid: https://orcid.org/0000-0002-3867-0881
- family-names: Turei
  given-names: Denes
  orcid: https://orcid.org/0000-0002-7249-9379
- family-names: Prymidis
  given-names: Dimitrios
  orcid: https://orcid.org/0009-0000-0168-3841
- family-names: Daley
  given-names: Macabe
  orcid: https://orcid.org/0000-0002-8026-7068
- family-names: Franken
  given-names: Jannik
- family-names: Saez-Rodriguez
  given-names: Julio
  orcid: https://orcid.org/0000-0002-8552-8976
- family-names: Frezza
  given-names: Christian
  orcid: https://orcid.org/0000-0002-3293-7397
preferred-citation:
  type: article
  title: Integrated metabolomics data analysis to generate mechanistic hypotheses
    with MetaProViz
  authors:
  - family-names: Schmidt
    given-names: Christina
    email: christina.schmidt.science@gmail.com
    orcid: https://orcid.org/0000-0002-3867-0881
  - family-names: Turei
    given-names: Denes
    orcid: https://orcid.org/0000-0002-7249-9379
  - family-names: Prymidis
    given-names: Dimitrios
    orcid: https://orcid.org/0009-0000-0168-3841
  - family-names: Daley
    given-names: Macabe
    orcid: https://orcid.org/0000-0002-8026-7068
  - family-names: Frezza
    given-names: Christian
    orcid: https://orcid.org/0000-0002-3293-7397
  - family-names: Saez-Rodriguez
    given-names: Julio
    orcid: https://orcid.org/0000-0002-8552-8976
  journal: BioRxiv
  year: '2025'
  month: '8'
  doi: 10.1101/2025.08.18.670781
  notes: 'bioRxiv preprint: https://www.biorxiv.org/content/10.1101/2025.08.18.670781v1.full'
repository: https://bioc.r-universe.dev
repository-code: https://github.com/saezlab/MetaProViz
commit: 02799d0d5ac3648b123862d0baf76f31f72b2441
url: https://saezlab.github.io/MetaProViz
date-released: '2026-04-28'
contact:
- family-names: Schmidt
  given-names: Christina
  email: christina.schmidt.science@gmail.com
  orcid: https://orcid.org/0000-0002-3867-0881